If you are searching for a delightful dessert that combines creamy richness with the fresh, warm flavors of autumn fruit, this Gluten Free Apple Cheesecake Bars Recipe will instantly become your new favorite. These bars bring together a perfectly crumbly gluten-free crust, a smooth, dreamy cheesecake filling, and tender caramelized apples on top, making every bite a harmonious blend of textures and tastes. Whether you’re catering to gluten sensitivities or simply craving a comforting treat, these bars deliver without compromise, transforming simple ingredients into a show-stopping dessert.

Ingredients You’ll Need
Getting the ingredients right is key to making these cheesecake bars truly shine. Each one plays a crucial role in creating the perfect balance of crunch, creaminess, sweetness, and that warm spiced apple magic.
- 1 1/2 cups gluten-free graham cracker crumbs (or gluten-free cookie crumbs): This forms our buttery, crispy base that holds everything together beautifully.
- 1/4 cup melted butter: Adds richness and helps bind the crust while giving it a golden finish.
- 1/4 cup sugar: Provides just the right amount of sweetness to the crust without overpowering.
- 16 oz (2 cups) cream cheese, softened: The star ingredient for that silky, luscious cheesecake layer.
- 1/2 cup granulated sugar: Sweetens the cheesecake filling for a perfect balance.
- 1 teaspoon vanilla extract: Adds depth and a cozy aroma to our filling.
- 2 large eggs: These give structure and richness to the cheesecake filling.
- 1/4 cup sour cream: Helps keep the filling moist and tender with a slight tang.
- 1 tablespoon all-purpose gluten-free flour (or cornstarch): Ensures the filling sets just right without cracking.
- 2 medium apples, peeled, cored, and thinly sliced: Fresh and ready to be caramelized for a warm, sweet topping.
- 2 tablespoons butter: Essential for caramelizing the apples to perfection.
- 2 tablespoons brown sugar: Adds a rich, molasses-like sweetness to our apples.
- 1 teaspoon cinnamon: Brings that signature cozy spiced flavor everyone loves with apples.
- 1 tablespoon lemon juice: A touch of brightness to balance the sweetness and keep apples fresh.
How to Make Gluten Free Apple Cheesecake Bars Recipe
Step 1: Prepare the Crust
Start by preheating your oven to 325°F (163°C) and lining an 8×8-inch baking pan with parchment paper for easy removal. In a mixing bowl, stir together the gluten-free graham cracker crumbs, melted butter, and sugar until the mixture resembles wet sand. Press this evenly into the bottom of your pan, creating a firm base. Bake it for 8 to 10 minutes until it turns golden brown and sets up nicely. Once done, let it cool while you get ready for the next layers.
Step 2: Make the Cheesecake Filling
In a large bowl, beat the softened cream cheese and granulated sugar until completely smooth and creamy—this ensures a silky texture. Then add the vanilla extract, eggs, sour cream, and gluten-free flour (or cornstarch). Mix until everything is well combined but be careful not to overmix to keep the batter light. Pour this luscious filling over the cooled crust, spreading it evenly with a spatula. Bake for 25–30 minutes until the edges are set but the center still jiggles slightly when you shake the pan; this gives us that perfect creamy mouthfeel. Remove and let it cool to room temperature before moving forward.
Step 3: Caramelize the Apples
While the cheesecake cools, melt butter in a skillet over medium heat. Add the sliced apples along with brown sugar, cinnamon, and lemon juice. Stir occasionally as the apples cook down, becoming tender and caramelized, usually around 5 to 7 minutes. This step transforms simple apples into a sweet, spiced topping that melds beautifully with the smooth cheesecake layer. Once caramelized, remove from the heat and allow the apple mixture to cool slightly.
Step 4: Assemble and Chill
After your cheesecake has cooled, evenly distribute the warm caramelized apples on top. This creates a tasty, visually appealing layer. To allow the bars to fully set and develop their flavors, refrigerate the entire pan for at least 2 hours or ideally overnight. This chill time lets everything firm up so you can slice cleanly into perfect bars.
Step 5: Slice and Serve
Once chilled, lift the bars out using the parchment paper edges and slice into squares. These bars are all about balance—the buttery crust, creamy filling, and tender spiced apples all coming together for an unforgettable bite. Serve and enjoy every creamy, caramel-kissed morsel!
How to Serve Gluten Free Apple Cheesecake Bars Recipe

Garnishes
Elevate your presentation by dusting the tops with a light sprinkle of powdered sugar or a pinch of cinnamon to amplify the cozy vibe. For added indulgence, a dollop of whipped cream or a drizzle of caramel sauce complements the apple topping beautifully, turning these bars into an elegant dessert perfect for any occasion.
Side Dishes
Pair these bars with a scoop of vanilla bean ice cream for a classic combo, or serve alongside a warm cup of spiced chai or freshly brewed coffee to balance the dessert’s sweetness. The creamy and fruity profile of the bars matches beautifully with these comforting beverages, perfect for an afternoon treat or after-dinner delight.
Creative Ways to Present
For a fun twist, serve individual bars on mini dessert plates with a sprig of fresh mint or a small side of caramelized apple slices. You can also stack two bars with a layer of cream or apple compote in between for an impressive layered presentation that’s perfect for parties or holiday gatherings.
Make Ahead and Storage
Storing Leftovers
These bars keep wonderfully well when stored in an airtight container in the refrigerator. They’ll stay fresh and creamy for up to 4 days, making them a smart make-ahead option for busy weeks or entertaining guests.
Freezing
If you want to enjoy these bars later, they freeze nicely. Wrap individual bars tightly in plastic wrap, then place them in a freezer-safe container or bag. They will keep well for up to 2 months. When ready to eat, thaw overnight in the fridge for the best texture and flavor.
Reheating
While these bars are generally best enjoyed chilled, you can warm them slightly in the microwave for about 15-20 seconds to take the chill off. Be careful not to heat too long, as the cheesecake filling can separate if overheated. Enjoy warmed bars with a scoop of ice cream for an irresistible dessert experience.
FAQs
Can I use any type of apple for this recipe?
Yes, but tart apples like Granny Smith work best because they hold their shape well when cooked and balance the sweetness beautifully. You can experiment with Fuji or Honeycrisp for a sweeter, softer apple topping if you prefer.
What gluten-free flour can I substitute in the filling?
All-purpose gluten-free flour blends work perfectly, but you can also use cornstarch as a thickener. Either option helps the cheesecake set without affecting the flavor or texture.
Can I make this recipe dairy-free?
While this recipe relies on cream cheese and butter for its signature richness, you could try dairy-free cream cheese and vegan butter substitutes, but be mindful that the texture and taste might differ slightly.
How do I ensure the crust doesn’t get soggy?
Be sure to bake the crust before adding the filling as directed. This pre-baking step helps it firm up and creates a barrier that keeps it from becoming soggy once the filling is added.
Can I double this recipe for a larger batch?
Absolutely! Just use a larger baking pan or two standard pans, adjusting the baking time as needed. Watch closely toward the end of baking to prevent overcooking.
Final Thoughts
There is something truly special about this Gluten Free Apple Cheesecake Bars Recipe that makes it a keeper in any dessert repertoire. With simple ingredients and manageable steps, you create a treat that’s comforting, elegant, and irresistibly delicious. Whether for fall festivities, weekend baking, or simply to satisfy your sweet tooth, these bars always bring smiles and happy moments. I can’t wait for you to give the recipe a try and watch it become your new go-to dessert.
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Gluten Free Apple Cheesecake Bars Recipe
- Prep Time: 30 minutes
- Cook Time: 40 minutes
- Total Time: 2 hours 30 minutes
- Yield: 9 servings
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Description
These Gluten Free Apple Cheesecake Bars feature a buttery, crisp gluten-free crust topped with a creamy vanilla cheesecake filling and adorned with tender, caramelized apple slices. Perfectly balanced with a touch of cinnamon and brown sugar, this dessert is ideal for those seeking a delicious gluten-free treat that’s both comforting and elegant.
Ingredients
Crust
- 1 1/2 cups gluten-free graham cracker crumbs (or gluten-free cookie crumbs)
- 1/4 cup melted butter
- 1/4 cup sugar
Cheesecake Filling
- 16 oz (2 cups) cream cheese, softened
- 1/2 cup granulated sugar
- 1 teaspoon vanilla extract
- 2 large eggs
- 1/4 cup sour cream
- 1 tablespoon all-purpose gluten-free flour (or cornstarch)
Caramelized Apple Topping
- 2 medium apples, peeled, cored, and thinly sliced
- 2 tablespoons butter
- 2 tablespoons brown sugar
- 1 teaspoon cinnamon
- 1 tablespoon lemon juice
Instructions
- Prepare the crust: Preheat your oven to 325°F (163°C) and line an 8×8-inch baking pan with parchment paper. In a bowl, combine the gluten-free graham cracker crumbs, melted butter, and sugar until evenly mixed. Press the mixture firmly into the bottom of the pan to create an even layer. Bake this crust for 8-10 minutes until golden and set. Remove and let it cool completely.
- Make the cheesecake filling: Beat the softened cream cheese with the granulated sugar until the mixture is smooth and creamy. Add the vanilla extract, eggs, sour cream, and gluten-free flour, mixing thoroughly until all ingredients are well incorporated. Pour this filling over the cooled crust and carefully smooth the top. Bake for 25-30 minutes, or until the center is just slightly jiggly when you gently shake the pan. Then, let it cool to room temperature.
- Caramelize the apples: Heat a skillet over medium heat and melt the butter. Add the sliced apples, brown sugar, cinnamon, and lemon juice. Cook, stirring occasionally, for 5-7 minutes or until the apples are tender and nicely caramelized. Remove from heat and let this mixture cool.
- Assemble and chill: Once the cheesecake has cooled, spread the caramelized apples evenly over the top. Place the pan in the refrigerator and chill for at least 2 hours or preferably overnight to allow the bars to set completely.
- Serve: After chilling, slice the cheesecake into bars and enjoy a delightful gluten-free dessert that combines creamy cheesecake with sweet, tender apples.
Notes
- Use gluten-free graham cracker crumbs or a suitable gluten-free cookie crumb for the crust to ensure the recipe remains gluten-free.
- For best results, use room temperature cream cheese to avoid lumps in the filling.
- Peeling and thinly slicing the apples helps them caramelize evenly and makes the topping smooth.
- Adjust cinnamon and sugar quantities according to your taste preference for sweetness and spice.
- These bars can be stored in the refrigerator for up to 3 days, tightly covered, to maintain freshness.

